Well it should be ok, I mean, you are putting something bigger than the frame designers antisipated. so it should feel different.
I was looking at thre 04 fluid specs, depending on what you have... the fork that is stock is 130mm zoki or if its the Fluid 2/3 then it uses a even smaller 120mm zoki. Thats is about 4.7 in to 5.1 in of travel depending on your fork. so going from 5 in to 6 in is alot
your bike should feel different, it should be fine. if you had it done at a LBs and the fork is new, then I wouldn't worry too much about it
if your fork is adjusted right, then its just a change in geomtry that you'll have to get use to. but...
if not, your rebound me be set to high is set too high, so your fork is 'tucking'. The fork isn't extending back quick enough and your bike will feel unstable
make sure your sag is 20-25% of the fork length, your rebound is quick enough to react to what ever your ride, but not too quick to 'kickup'
and make sure your spring rate and compression is high enough to prevent you from bottoming.
if those are set correctly, then nothing to much to worry about.
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